Stem-loop sequence bta-mir-20b

Accession

MI0005015 (change log)

Description

Bos taurus miR-20b stem-loop

Gene family

MIPF0000001; mir-17

Literature search

10 open access papers mention bta-mir-20b
(20 sentences)

Stem-loop

        -ca           g     g   uuuu     
5' aguac   aagugcucaca ugcag uag    ggca 
   |||||   ||||||||||| ||||| |||    ||| g
3' ucaug   uucacgggugu auguc auc    ucgc 
        acc           g     -   ----     

Deep sequencing

11621 reads, 58.6 reads per million, 70 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chrX: 18021463-18021531 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bta-mir-20b

• bta-mir-106a: chrX: 18021857-18021937 [-]
• bta-mir-18b: chrX: 18021698-18021772 [-]
• bta-mir-20b: chrX: 18021463-18021531 [-]
• bta-mir-19b-2: chrX: 18021338-18021420 [-]
• bta-mir-92a-2: chrX: 18021187-18021254 [-]
• bta-mir-363: chrX: 18021032-18021105 [-]

Database links

• EntrezGene:MIR20B
• miRBase Tracker:MI0005015

Mature sequence bta-miR-20b

• Accession: MIMAT0003796
• Sequence: 6 - caaagugcucacagugcaggua - 27
• Deep sequencing: 11606 reads, 70 experiments
• Evidence: experimental; cloned [1]
• Predicted targets:
  • TargetScanVert:bta-miR-20b

References

1. PMID:17105755 "Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues" Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP Physiol Genomics. 29:35-43(2007).