miRBase entry: bta-mir-30e

Stem-loop bta-mir-30e


Accession
MI0005018
Description
Bos taurus bta-mir-30e precursor miRNA
Gene family
MIPF0000005; mir-30

Literature search
20 open access papers mention bta-mir-30e
(139 sentences)

Sequence

347361 reads, 4607 reads per million, 78 experiments
gggcagucuuugcuacUGUAAACAUCCUUGACUGGAAGCUguaaggcguugcaaggagcuuucagucggauguuuacagcggcaggcugcca
.((((((((..(((.((((((((((((..(((((((((((.....((...))....))))))))))))))))))))))).))))))))))).

Structure
g        uu   a            UU           guaag  g 
 ggcagucu  gcu cUGUAAACAUCC  GACUGGAAGCU     gc  
 ||||||||  ||| ||||||||||||  |||||||||||     || u
 ccgucgga  cgg gacauuuguagg  cugacuuucga     cg  
a        --   c            --           -ggaa  u 


Annotation confidence High
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Genome context
chr3: 106453038-106453129 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-30e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-30e-5p

Accession MIMAT0003799
Description Bos taurus bta-miR-30e-5p mature miRNA
Sequence 17 - UGUAAACAUCCUUGACUGGAAGCU - 40
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43