miRBase entry: bta-let-7d

Stem-loop bta-let-7d


Accession
MI0005026
Description
Bos taurus bta-let-7d precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
55 open access papers mention bta-let-7d
(217 sentences)

Sequence

99425 reads, 807 reads per million, 75 experiments
ccuaggaAGAGGUAGUAGGUUGCAUAGUUuucgggcagggauuuugcccacaaggagguaacuauacgaccugcugccuuucuuagg
(((((((.((((((((((((((.((((((.((((((((.....)))))).......)).)))))).)))))))))))))))))))))

Structure
       A              C      u  -------      g 
ccuagga GAGGUAGUAGGUUG AUAGUU uc       gggcag g
||||||| |||||||||||||| |||||| ||       |||||| a
ggauucu uuccgucguccagc uaucaa gg       cccguu u
       -              a      u  aggaaca      u 


Annotation confidence High
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Genome context
chr8: 87366413-87366499 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from bta-let-7d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-let-7d

Accession MIMAT0003810
Description Bos taurus bta-let-7d mature miRNA
Sequence 8 - AGAGGUAGUAGGUUGCAUAGUU - 29
Evidence experimental
cloned [1], Array [2], qRT-PCR [2]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43

  2. PubMed ID: 19170227
    Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
    "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
    "Mol Reprod Dev (2009) 76:665-677