miRBase entry: bta-mir-138-2

Stem-loop bta-mir-138-2


Accession
MI0005029
Description
Bos taurus bta-mir-138-2 precursor miRNA
Gene family
MIPF0000075; mir-138

Literature search
8 open access papers mention bta-mir-138-2
(16 sentences)

Sequence

3228 reads, 47 reads per million, 66 experiments
guugcugcAGCUGGUGUUGUGAAUCAGGCCGacgagcagcgcauccucuuacccggcuauuucacgacaccaggguugcauca
(.(((.((..(((((((((((((...(((((..(((.((......)))))...)))))..))))))))))))).)).))).).

Structure
- u   u  AG             UCA     -ac   c  cg 
 g ugc gc  CUGGUGUUGUGAA   GGCCG   gag ag  c
 | ||| ||  |||||||||||||   |||||   ||| ||   
 c acg ug  gaccacagcacuu   ucggc   uuc uc  a
a u   u  -g             -ua     cca   -  cu 


Annotation confidence High
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Genome context
chr18: 25049218-25049300 [+]

Database links

Mature bta-miR-138

Accession MIMAT0003813
Description Bos taurus bta-miR-138 mature miRNA
Sequence 9 - AGCUGGUGUUGUGAAUCAGGCCG - 31
Evidence experimental
cloned [2]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43

  2. PubMed ID: 19170227
    Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
    "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
    "Mol Reprod Dev (2009) 76:665-677