miRBase entry: bta-mir-199b

Stem-loop bta-mir-199b


Accession
MI0005036
Description
Bos taurus bta-mir-199b precursor miRNA
Gene family
MIPF0000040; mir-199

Literature search
13 open access papers mention bta-mir-199b
(33 sentences)

Sequence

322045 reads, 3339 reads per million, 67 experiments
ccuccacuccgucuaCCCAGUGUUUAGACUAUCUGUUCaggacucccaaauuguacaguagucugcacauugguuaggcugggcuggguuagacccucgg
..(((((((.(((((.(((((((.(((((((.((((.(((..........))).))))))))))).))))))).))))).))).))))............

Structure
----------cc    -   c     C       U       U    U   gacu 
            ucca cuc gucua CCAGUGU UAGACUA CUGU Cag    c
            |||| ||| ||||| ||||||| ||||||| |||| |||     
            gggu ggg cggau gguuaca gucugau gaca guu    c
ggcucccagauu    c   u     u       c       -    u   aaac 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr11: 99127762-99127861 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from bta-mir-199b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-199b

Accession MIMAT0003821
Description Bos taurus bta-miR-199b mature miRNA
Sequence 16 - CCCAGUGUUUAGACUAUCUGUUC - 38
Evidence experimental
cloned [1-2]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43

  2. PubMed ID: 17306260
    Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
    "Gu Z, Eleswarapu S, Jiang H"
    "FEBS Lett (2007) 581:981-988