miRBase entry: bta-mir-214

Stem-loop bta-mir-214


Accession
MI0005040
Description
Bos taurus bta-mir-214 precursor miRNA
Gene family
MIPF0000062; mir-214

Literature search
11 open access papers mention bta-mir-214
(19 sentences)

Sequence

5946 reads, 95 reads per million, 66 experiments
ggccuggcuggacggaguugucaugugucugccugucuacacuugcugugcagaacauccgcucaccuguACAGCAGGCACAGACAGGCAGUcacaugacaacccagccu
.....((((((.....(((((((((((.((((((((((...((((((((((((.............))))))))))))...)))))))))).))))))))))))))))).

Structure
ggccu      acgga           u          aca            aacau 
     ggcugg     guugucaugug cugccugucu   cuugcugugcag     c
     ||||||     ||||||||||| ||||||||||   ||||||||||||     c
     ccgacc     caacaguacac GACGGACAGA   GGACGACAuguc     g
----u      -----           U          CAC            cacuc 


Annotation confidence High
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Comments
The mature sequence shown here was cloned by Gu et al. [2] and is consistent with that identified in rat (MIR:MI0000954) and zebrafish (MIR:MI0001381). The mature product reported by Coutinho et al. is extended by two bases at the 5' end [1].

Genome context
chr16: 40640361-40640470 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from bta-mir-214
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-214

Accession MIMAT0003825
Description Bos taurus bta-miR-214 mature miRNA
Sequence 71 - ACAGCAGGCACAGACAGGCAGU - 92
Evidence experimental
cloned [1-2], Array [3], qRT-PCR [3]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43

  2. PubMed ID: 17306260
    Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
    "Gu Z, Eleswarapu S, Jiang H"
    "FEBS Lett (2007) 581:981-988

  3. PubMed ID: 19170227
    Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
    "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
    "Mol Reprod Dev (2009) 76:665-677