miRBase entry: bta-mir-23a

Stem-loop bta-mir-23a


Accession
MI0005042
Description
Bos taurus bta-mir-23a precursor miRNA
Gene family
MIPF0000027; mir-23

Literature search
24 open access papers mention bta-mir-23a
(97 sentences)

Sequence

38540 reads, 466 reads per million, 75 experiments
ggccggcugggguuccuggggaugggauuugcugccugucacaaAUCACAUUGCCAGGGAUUUCCAaccgacc
((.(((.((((((((((((.((((.((((((.((.....)))))))).)))).))))))).))))).))).))

Structure
  c   c     -       g    g      c  c 
gg cgg ugggg uuccugg gaug gauuug ug c
|| ||| ||||| ||||||| |||| |||||| || u
cc gcc ACCUU AGGGACC UUAC CUAaac ac g
  a   a     U       G    A      -  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr7: 13046186-13046258 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from bta-mir-23a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-23a

Accession MIMAT0003827
Description Bos taurus bta-miR-23a mature miRNA
Sequence 45 - AUCACAUUGCCAGGGAUUUCCA - 66
Evidence experimental
cloned [1-2]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43

  2. PubMed ID: 17306260
    Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
    "Gu Z, Eleswarapu S, Jiang H"
    "FEBS Lett (2007) 581:981-988