miRBase entry: bta-mir-342

Stem-loop bta-mir-342


Accession
MI0005059
Description
Bos taurus bta-mir-342 precursor miRNA
Gene family
MIPF0000190; mir-342

Literature search
4 open access papers mention bta-mir-342
(7 sentences)

Sequence

29481 reads, 354 reads per million, 75 experiments
uggaagcgggugcgaggcgaggggugcuaucugugguugaggacacggcaaaugaaacugUCUCACACAGAAAUCGCACCCAUCUccucggccc
.......((((.(((((.((.((((((..((((((..((((.(((.(..........))))))))))))))....)))))).)).)))))))))

Structure
uggaagc    g     c  g      --ua      gu    g   c gcaa 
       gggu cgagg ga gggugc    ucugug  ugag aca g    a
       |||| ||||| || ||||||    ||||||  |||| ||| |     
       cccg gcucc CU CCCACG    AGACAC  ACUC Ugu c    u
-------    -     U  A      CUAA      --    -   - aaag 


Annotation confidence High
Do you think this miRNA is real?
Comments
The miR-342 mature product reported by Gu et al. is truncated at the 3' end [2].

Genome context
chr21: 66986215-66986308 [+]

Database links

Mature bta-miR-342

Accession MIMAT0003846
Description Bos taurus bta-miR-342 mature miRNA
Sequence 61 - UCUCACACAGAAAUCGCACCCAUCU - 85
Evidence experimental
cloned [1-3]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43

  2. PubMed ID: 17306260
    Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
    "Gu Z, Eleswarapu S, Jiang H"
    "FEBS Lett (2007) 581:981-988

  3. PubMed ID: 19267191
    Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning
    "Long JE, Chen HX"
    "Biochem Genet (2009) 47:329-343