Stem-loop bta-mir-30c

Accession

MI0005064

Description

Bos taurus bta-mir-30c precursor miRNA

Literature search

21 open access papers mention bta-mir-30c
(120 sentences)

Sequence

75410 reads, 793 reads per million, 76 experiments

cagacuguaaccaugccguagugugUGUAAACAUCCUACACUCUCAGCugugagcucgagguggcugggagaggguuguuuacuccuucugccauggaaaacguc
..(((.((..(((((..((((...(.(((((((.(((...(((((((((....(((...)))))))))))).))).))))))).)...)))))))))...)))))

Structure

ca   u  -aa     cc    ugu U       U   ACA         guga   c 
  gac gu   ccaug  guag   g GUAAACA CCU   CUCUCAGCu    gcu  
  ||| ||   |||||  ||||   | ||||||| |||   |||||||||    ||| g
  cug ca   gguac  cguc   c cauuugu ggg   gagggucgg    ugg  
--   -  aaa     --    uuc u       u   --a         ----   a 

Annotation confidence Medium

Comments

The mature miR-30c sequence identified by Sonstegard et al [1] has an additional G base at the 3' end, which conflicts with the draft genome sequence.

Genome context

chr3: 106449904-106450008 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-30c

Mature bta-miR-30c

• Accession: MIMAT0003850
• Description: Bos taurus bta-miR-30c mature miRNA
• Sequence: 26 - UGUAAACAUCCUACACUCUCAGC - 48
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43