Stem-loop cel-mir-784

Accession

MI0005184

Description

Caenorhabditis elegans cel-mir-784 precursor miRNA

Literature search

1 open access papers mention cel-mir-784
(6 sentences)

Sequence

2793 reads, 176 reads per million, 10 experiments

uucgacguccacgUGGCACAAUCUGCGUACGUAGAaagaucaaaaagucacuucUAUGUACAAAUGUUGCGCUGCCuggcacagugaa
.(((..(((((.(((((.((((....((((((((((.(((......)))..))))))))))....)))).))))).))).))..))).

Structure

u   ac  -   c     A    CUGC          -a   ca 
 ucg  gu cca gUGGC CAAU    GUACGUAGAa  gau  a
 |||  || ||| ||||| ||||    ||||||||||  |||   
 agu  ca ggu CGUCG GUUG    CAUGUAUcuu  cug  a
a   ga  c   C     C    UAAA          ca   aa 

Annotation confidence Not enough data

Genome context

chrX: 8074922-8075009 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cel-mir-784

Mature cel-miR-784-5p

• Accession: MIMAT0004219
• Description: Caenorhabditis elegans cel-miR-784-5p mature miRNA
• Sequence: 14 - UGGCACAAUCUGCGUACGUAGA - 35
• Evidence: experimental ; 454 [1], Illumina [2-3]

Mature cel-miR-784-3p

• Accession: MIMAT0020347
• Description: Caenorhabditis elegans cel-miR-784-3p mature miRNA
• Sequence: 55 - UAUGUACAAAUGUUGCGCUGCC - 76
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 17174894
   Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
   "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
   "Cell (2006) 127:1193-1207


2. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54


3. PubMed ID: 21307183
   Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer
   "Warf MB, Johnson WE, Bass BL"
   "RNA (2011) 17:563-577