Stem-loop cel-mir-787

Accession

MI0005187

Description

Caenorhabditis elegans cel-mir-787 precursor miRNA

Gene family

MIPF0000364; mir-787

Literature search

1 open access papers mention cel-mir-787
(2 sentences)

Sequence

1415 reads, 15 reads per million, 14 experiments

gauguaucaguggacgAAAGAUACAUACGAUCUUACAucuucaaaaugguaugUAAGCUCGUUUUAGUAUCUUUCGucucugaucacauu
((((((((((.(((((((((((((..((((.(((((((((.......)).))))))).))))....)))))))))))))))))).)))))

Structure

     -     u             --AU    U       -  uc 
gaugu aucag ggacgAAAGAUAC    ACGA CUUACAu cu  a
||||| ||||| |||||||||||||    |||| ||||||| ||  a
uuaca uaguc ucuGCUUUCUAUG    UGCU GAAUgua gg  a
     c     -             AUUU    C       u  ua 

Annotation confidence Not enough data

Genome context

chrX: 11294708-11294797 [+]

Mature cel-miR-787-3p

• Accession: MIMAT0004222
• Description: Caenorhabditis elegans cel-miR-787-3p mature miRNA
• Sequence: 54 - UAAGCUCGUUUUAGUAUCUUUCG - 76
• Evidence: experimental ; 454 [1], Illumina [2-3]

Mature cel-miR-787-5p

• Accession: MIMAT0020348
• Description: Caenorhabditis elegans cel-miR-787-5p mature miRNA
• Sequence: 17 - AAAGAUACAUACGAUCUUACA - 37
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 17174894
   Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
   "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
   "Cell (2006) 127:1193-1207


2. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54


3. PubMed ID: 21307183
   Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer
   "Warf MB, Johnson WE, Bass BL"
   "RNA (2011) 17:563-577