Stem-loop sequence cel-mir-794

Accession

MI0005195 (change log)

Description

Caenorhabditis elegans miR-794 stem-loop

Literature search

6 open access papers mention cel-mir-794
(9 sentences)

Stem-loop

       gcgu    c        au  u    g   c   g  a 
5' cuga    gucu uugaggua  ca cguu uca uuc ca a
   ||||    |||| ||||||||  || |||| ||| ||| ||  
3' gacu    cgga agcucuau  gu gcaa agu aag gu g
       -auu    a        cu  u    a   u   -  u 

Deep sequencing

2030 reads, 0 reads per million, 13 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (WBcel235; GCA_000002985.3): chrI: 12595690-12595773 [+]
• Overlapping transcripts:

  antisense

  F33E2.5.1 ; F33E2.5.1; intron 2

Clustered miRNAs

< 10kb from cel-mir-794

• cel-mir-795: chrI: 12594569-12594657 [+]
• cel-mir-794: chrI: 12595690-12595773 [+]

Database links

• RNAcentral:URS000034B3C8_6239
• miRBase Tracker:MI0005195

Mature sequence cel-miR-794-5p

• Accession: MIMAT0004229
• Previous IDs: cel-miR-794
• Sequence: 15 - ugagguaaucaucguugucacu - 36
• Deep sequencing: 1919 reads, 10 experiments
• Evidence: experimental; 454 [1], Illumina [2-3]
• Database links:
  • RNAcentral:URS00003A1B85_6239
• Predicted targets:
  • TargetScanWorm:cel-miR-794
  • microrna.org:cel-miR-794-5p

Mature sequence cel-miR-794-3p

• Accession: MIMAT0020352
• Previous IDs: cel-miR-794*
• Sequence: 52 - ugaaaacguugucuaucucgaa - 73
• Deep sequencing: 37 reads, 9 experiments
• Evidence: experimental; Illumina [3]
• Database links:
  • RNAcentral:URS0000389A39_6239

References

1. PMID:17174894 "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans" Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP Cell. 127:1193-1207(2006).
2. PMID:19460142 "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development" Kato M, de Lencastre A, Pincus Z, Slack FJ Genome Biol. 10:R54(2009).
3. PMID:21307183 "Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer" Warf MB, Johnson WE, Bass BL RNA. 17:563-577(2011).