Stem-loop sequence cel-mir-795

Accession

MI0005196 (change log)

Description

Caenorhabditis elegans miR-795 stem-loop

Literature search

5 open access papers mention cel-mir-795
(7 sentences)

Stem-loop

        --   a    c       g        g   gc    uac 
5' gaaac  guu ccug ugaggua auugauca cga  uuga   c
   |||||  ||| |||| ||||||| |||||||| |||  ||||    
3' uuuug  cga ggac gcuucau ugacuagu gcu  aacu   c
        uu   c    u       a        -   aa    ugc 

Deep sequencing

110341 reads, 247 reads per million, 17 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (WBcel235; GCA_000002985.3): chrI: 12594569-12594657 [+]
• Overlapping transcripts:

  antisense

  F33E2.5.1 ; F33E2.5.1; intron 2

Clustered miRNAs

< 10kb from cel-mir-795

• cel-mir-795: chrI: 12594569-12594657 [+]
• cel-mir-794: chrI: 12595690-12595773 [+]

Database links

• RNAcentral:URS000049E131_6239
• miRBase Tracker:MI0005196

Mature sequence cel-miR-795-5p

• Accession: MIMAT0004230
• Previous IDs: cel-miR-795
• Sequence: 15 - ugagguagauugaucagcgagcuu - 38
• Deep sequencing: 109553 reads, 17 experiments
• Evidence: experimental; 454 [1], Illumina [2,4], CLIPseq [3]
• Database links:
  • RNAcentral:URS00003627A1_6239
• Predicted targets:
  • TargetScanWorm:cel-miR-795
  • microrna.org:cel-miR-795-5p

Mature sequence cel-miR-795-3p

• Accession: MIMAT0020353
• Previous IDs: cel-miR-795*
• Sequence: 53 - aaucgugaucaguauacuucguc - 75
• Deep sequencing: 788 reads, 12 experiments
• Evidence: experimental; Illumina [4]
• Database links:
  • RNAcentral:URS00002ABB08_6239

References

1. PMID:17174894 "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans" Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP Cell. 127:1193-1207(2006).
2. PMID:19460142 "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development" Kato M, de Lencastre A, Pincus Z, Slack FJ Genome Biol. 10:R54(2009).
3. PMID:20062054 "Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans" Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW Nat Struct Mol Biol. 17:173-179(2010).
4. PMID:21307183 "Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer" Warf MB, Johnson WE, Bass BL RNA. 17:563-577(2011).