Stem-loop osa-MIR812b

Accession

MI0005234

Description

Oryza sativa osa-MIR812b precursor miRNA

Gene family

MIPF0000345; MIR812

Literature search

9 open access papers mention osa-MIR812b
(15 sentences)

Sequence

1263 reads, 601 reads per million, 2 experiments

guauccguaucuacguuugaccguucgucuuauuugaaaauuuuaugaaaagauuaaaaaaauagucacgcauaaaguaauauucauguuuuaucaucuaauaacaauaaaaauacuaaucauuaaaaauuuucaaauaaGACGGACGGUUAAACGUUGGACacgaauac
((((.(((.(((((((((((((((((((((((((((((((((((((((...(((((......)))))........((((.......((((............)))).......))))..))))..))))))))))))))))))))))))))))))).)))).))).))))

Structure

    c   a    -                               --    aaagauuaaaaaaauagucacgcauaa    auauuca    uuauc 
guau cgu ucua cguuugaccguucgucuuauuugaaaauuuu  auga                           agua       uguu     a
|||| ||| |||| |||||||||||||||||||||||||||||||  ||||                           ||||       ||||      
caua gca AGGU GCAAAUUGGCAGGCAGaauaaacuuuuaaaa  uacu                           ucau       acaa     u
    a   C    U                               au    -------------------------aa    aaaaaua    uaauc 

Annotation confidence Low

Comments

miR812 was misnamed miR569 by Luo et al [1].

Genome context

Chr2: 1936324-1936493 [-]

Mature osa-miR812b

• Accession: MIMAT0004050
• Description: Oryza sativa osa-miR812b mature miRNA
• Sequence: 141 - GACGGACGGUUAAACGUUGGAC - 162
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 16959252
   Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development
   "Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH"
   "FEBS Lett (2006) 580:5111-5116