Stem-loop sequence mdo-mir-9a-1

Accession

MI0005272 (change log)

Description

Monodelphis domestica miR-9a-1 stem-loop

Gene family

MIPF0000014; mir-9

Stem-loop

   c    cc       -  c               g     gu   a 
5'  gagg  cguuucu cu uuugguuaucuagcu uauga  guu u
    ||||  ||||||| || ||||||||||||||| |||||  |||  
3'  cuuu  guaaaga ga aagccaauagaucga auacu  cga u
   a    ca       u  -               a     au   g 

Deep sequencing

2380757 reads, 3.39e+04 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (MonDom5; GCF_000002295.2): chr1: 122711570-122711659 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mdo-mir-9a-1

• mdo-mir-9c-3: chr1: 122711587-122711644 [+]
• mdo-mir-9a-1: chr1: 122711570-122711659 [-]

Database links

• EntrezGene:Mir9-1
• miRBase Tracker:MI0005272

Mature sequence mdo-miR-9a-5p

• Accession: MIMAT0004087
• Previous IDs: mdo-miR-9
• Sequence: 16 - ucuuugguuaucuagcuguauga - 38
• Deep sequencing: 6991910 reads, 5 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00004208C5_13616
• Predicted targets:
  • TargetScanVert:mdo-miR-9a-5p

Mature sequence mdo-miR-9a-3p

• Accession: MIMAT0004088
• Previous IDs: mdo-miR-9*
• Sequence: 55 - auaaagcuagauaaccgaaagu - 76
• Deep sequencing: 145444 reads, 5 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00003496BE_13616
• Predicted targets:
  • TargetScanVert:mdo-miR-9a-3p

References

1. PMID:17965199 "In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica" Devor EJ, Samollow PB J Hered. 99:66-72(2008).