miRBase entry: mdo-mir-9a-1

Stem-loop mdo-mir-9a-1


Accession
MI0005272
Description
Monodelphis domestica mdo-mir-9a-1 precursor miRNA
Gene family
MIPF0000014; mir-9


Sequence

1674785 reads, 25316 reads per million, 5 experiments
cgaggcccguuucucUCUUUGGUUAUCUAGCUGUAUGAguguuauugagcuaucAUAAAGCUAGAUAACCGAAAGUagaaaugacuuuca
.((((..(((((((((.(((((((((((((((.(((((..(((....)))..))))).))))))))))))))))).)))))))..)))).

Structure
c    cc       -  C               G     gu   a 
 gagg  cguuucu cU UUUGGUUAUCUAGCU UAUGA  guu u
 ||||  ||||||| || ||||||||||||||| |||||  |||  
 cuuu  guaaaga GA AAGCCAAUAGAUCGA AUAcu  cga u
a    ca       U  -               A     au   g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr1: 122711570-122711659 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mdo-mir-9a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-9a-3p

Accession MIMAT0004088
Description Monodelphis domestica mdo-miR-9a-3p mature miRNA
Sequence 55 - AUAAAGCUAGAUAACCGAAAGU - 76
Evidence experimental
Illumina [1]
Database links
Predicted targets

Mature mdo-miR-9a-5p

Accession MIMAT0004087
Description Monodelphis domestica mdo-miR-9a-5p mature miRNA
Sequence 16 - UCUUUGGUUAUCUAGCUGUAUGA - 38
Evidence experimental
Illumina [1]
Database links
Predicted targets

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72