Stem-loop mdo-mir-31

Accession

MI0005278

Description

Monodelphis domestica mdo-mir-31 precursor miRNA

Gene family

MIPF0000064; mir-31

Sequence

6590 reads, 164 reads per million, 5 experiments

agcuggagaGGAGGCAAGAUGUUGGCAUAGCUGuugaacugagaaccuGCUAUGCCAACAUAUUGCCAUCuuucuugucuaucagca
.((((((((((.(((((.(((((((((((((.(((........)))..))))))))))))).))))).))))))........)))).

Structure

a    --------      A     G             -U   gaa 
 gcug        gagaGG GGCAA AUGUUGGCAUAGC  Guu   c
 ||||        |||||| ||||| |||||||||||||  |||    
 cgac        cuuuCU CCGUU UACAACCGUAUCG  caa   u
a    uaucuguu      A     A             uc   gag 

Annotation confidence High

Genome context

chr6: 35734628-35734714 [-]

Mature mdo-miR-31-5p

• Accession: MIMAT0004094
• Description: Monodelphis domestica mdo-miR-31-5p mature miRNA
• Sequence: 10 - GGAGGCAAGAUGUUGGCAUAGCUG - 33
• Evidence: experimental ; Microarray [1], PCR [1], Illumina [2]

Mature mdo-miR-31-3p

• Accession: MIMAT0026653
• Description: Monodelphis domestica mdo-miR-31-3p mature miRNA
• Sequence: 49 - GCUAUGCCAACAUAUUGCCAUC - 70
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45