Stem-loop sequence mdo-mir-103-2

Accession

MI0005285 (change log)

Description

Monodelphis domestica miR-103-2 stem-loop

Gene family

MIPF0000024; mir-103

Stem-loop

   --      g      --   u  u           c   uu   u 
5'   cuuggu cuuuca  gcu cu uacagugcugc uug  gca u
     |||||| ||||||  ||| || ||||||||||| |||  |||  
3'   gaacca gaaagu  cgg ga auguuacgacg aac  ugu g
   ua      a      au   -  c           -   --   a 

Deep sequencing

208879 reads, 3.16e+03 reads per million, 5 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (MonDom5; GCF_000002295.2): chr1: 727148312-727148395 [-]
• Overlapping transcripts:

  sense

  ENSMODT00000019620 ; PANK2-201; intron 7

Database links

• EntrezGene:Mir103-2
• miRBase Tracker:MI0005285

Mature sequence mdo-miR-103-2-5p

• Accession: MIMAT0031097
• Sequence: 13 - agcuucuuuacagugcugccuug - 35
• Deep sequencing: 135 reads, 4 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:mdo-miR-103-2-5p

Mature sequence mdo-miR-103-3p

• Accession: MIMAT0004099
• Sequence: 50 - agcagcauuguacagggcuauga - 72
• Deep sequencing: 417491 reads, 5 experiments
• Evidence: experimental; Microarray [1], PCR [1], Illumina [2]
• Database links:
  • RNAcentral:URS0000476BE1_13616
• Predicted targets:
  • TargetScanVert:mdo-miR-103-3p

References

1. PMID:17965199 "In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica" Devor EJ, Samollow PB J Hered. 99:66-72(2008).
2. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).