Stem-loop sequence mdo-mir-124a-1

Accession

MI0005288 (change log)

Description

Monodelphis domestica miR-124a-1 stem-loop

Gene family

MIPF0000021; mir-124

Stem-loop

   a      uc   cc        a   ga        uaaau 
5'  ggccuc  ucu  guguucac gcg  ccuugauu     g
    ||||||  |||  |||||||| |||  ||||||||     u
3'  ucgggg  aga  cguaagug cgc  ggaauuaa     c
   g      ua   ac        g   ac        cauac 

Deep sequencing

186335 reads, 2.78e+03 reads per million, 4 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (MonDom5; GCF_000002295.2): chr1: 587846264-587846348 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mdo-mir-124a-1

• mdo-mir-7258: chr1: 587845369-587845435 [+]
• mdo-mir-124a-1: chr1: 587846264-587846348 [+]

Database links

• EntrezGene:Mir124a-1
• miRBase Tracker:MI0005288

Mature sequence mdo-miR-124a-5p

• Accession: MIMAT0026660
• Sequence: 15 - guguucacagcggaccuugau - 35
• Deep sequencing: 7313 reads, 3 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:mdo-miR-124a-5p

Mature sequence mdo-miR-124a-3p

• Accession: MIMAT0004102
• Sequence: 52 - uuaaggcacgcggugaaugcca - 73
• Deep sequencing: 551664 reads, 4 experiments
• Evidence: experimental; Microarray [1], PCR [1], Illumina [2]
• Database links:
  • RNAcentral:URS00000B89C8_13616
• Predicted targets:
  • TargetScanVert:mdo-miR-124a-3p

References

1. PMID:17965199 "In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica" Devor EJ, Samollow PB J Hered. 99:66-72(2008).
2. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).