miRBase entry: mdo-mir-130a

Stem-loop mdo-mir-130a


Accession
MI0005295
Description
Monodelphis domestica mdo-mir-130a precursor miRNA
Gene family
MIPF0000034; mir-130


Sequence

10695 reads, 176 reads per million, 5 experiments
uggccagaGCUCUUUUCACAUUGUGCUACUgucugcaccuaucacuagCAGUGCAAUGUAAAAAGGGCAUuggcug
.((((((.((((((((.((((((((((.(((..............))).)))))))))).)))))))).)))))).

Structure
u      a        C          A   ucugca 
 ggccag GCUCUUUU ACAUUGUGCU CUg      c
 |||||| |||||||| |||||||||| |||       
 ucgguU CGGGAAAA UGUAACGUGA gau      c
g      A        A          C   cacuau 


Annotation confidence Not enough data
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Genome context
chr5: 291845601-291845676 [+]

Database links

Mature mdo-miR-130a-3p

Accession MIMAT0004106
Description Monodelphis domestica mdo-miR-130a-3p mature miRNA
Sequence 49 - CAGUGCAAUGUAAAAAGGGCAU - 70
Evidence experimental
Illumina [2]

Mature mdo-miR-130a-5p

Accession MIMAT0026664
Description Monodelphis domestica mdo-miR-130a-5p mature miRNA
Sequence 9 - GCUCUUUUCACAUUGUGCUACU - 30
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45