Stem-loop mdo-mir-130a

Accession

MI0005295

Description

Monodelphis domestica mdo-mir-130a precursor miRNA

Sequence

10693 reads, 174 reads per million, 5 experiments

uggccagaGCUCUUUUCACAUUGUGCUACUgucugcaccuaucacuagCAGUGCAAUGUAAAAAGGGCAUuggcug
.((((((.((((((((.((((((((((.(((..............))).)))))))))).)))))))).)))))).

Structure

u      a        C          A   ucugca 
 ggccag GCUCUUUU ACAUUGUGCU CUg      c
 |||||| |||||||| |||||||||| |||       
 ucgguU CGGGAAAA UGUAACGUGA gau      c
g      A        A          C   cacuau 

Annotation confidence Not enough data

Genome context

chr5: 291845601-291845676 [+]

Mature mdo-miR-130a-3p

• Accession: MIMAT0004106
• Description: Monodelphis domestica mdo-miR-130a-3p mature miRNA
• Sequence: 49 - CAGUGCAAUGUAAAAAGGGCAU - 70
• Evidence: experimental ; Illumina [2]

Mature mdo-miR-130a-5p

• Accession: MIMAT0026664
• Description: Monodelphis domestica mdo-miR-130a-5p mature miRNA
• Sequence: 9 - GCUCUUUUCACAUUGUGCUACU - 30
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45