Stem-loop mdo-mir-143

Accession

MI0005302

Description

Monodelphis domestica mdo-mir-143 precursor miRNA

Gene family

MIPF0000094; mir-143

Sequence

2186745 reads, 45260 reads per million, 5 experiments

cccgagGUGCAGUGCUGCAUCUCUGGucaguugugagucUGAGAUGAAGCACUGUAGCUCGgg
((((((.(((((((((.((((((.(((((....))).)).)))))).))))))))).))))))

Structure

      G         G      U  -   g 
cccgag UGCAGUGCU CAUCUC GG uca u
|||||| ||||||||| |||||| || |||  
ggGCUC AUGUCACGA GUAGAG cu agu u
      G         A      U  g   g 

Annotation confidence High

Genome context

chr1: 377176751-377176813 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-143

Mature mdo-miR-143-3p

• Accession: MIMAT0004113
• Description: Monodelphis domestica mdo-miR-143-3p mature miRNA
• Sequence: 40 - UGAGAUGAAGCACUGUAGCUCG - 61
• Evidence: experimental ; Microarray [1], PCR [1], Illumina [2]

Mature mdo-miR-143-5p

• Accession: MIMAT0026668
• Description: Monodelphis domestica mdo-miR-143-5p mature miRNA
• Sequence: 7 - GUGCAGUGCUGCAUCUCUGG - 26
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45