miRBase entry: mdo-let-7a-2

Stem-loop mdo-let-7a-2


Accession
MI0005330
Description
Monodelphis domestica mdo-let-7a-2 precursor miRNA
Gene family
MIPF0000002; let-7


Sequence

2621839 reads, 45193 reads per million, 5 experiments
agguUGAGGUAGUAGGUUGUAUAGUUuagaauuacaucaagggagauaaCUGUACAGCCUCCUAGCUUUCCuu
(((..(((.(((.(((((((((((((.........(((......)))))))))))))))).))).))).))).

Structure
-   uU   G   U             uagaauuac   aa 
 agg  GAG UAG AGGUUGUAUAGUU         auc  g
 |||  ||| ||| |||||||||||||         |||   
 uCC  UUC AUC UCCGACAUGUCaa         uag  g
u   -U   G   C             ---------   ag 


Annotation confidence High
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Genome context
chr4: 226185493-226185565 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mdo-let-7a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-let-7a-5p

Accession MIMAT0004141
Description Monodelphis domestica mdo-let-7a-5p mature miRNA
Sequence 5 - UGAGGUAGUAGGUUGUAUAGUU - 26
Evidence experimental
Microarray [1], PCR [1]
Database links
Predicted targets

Mature mdo-let-7a-3p

Accession MIMAT0026686
Description Monodelphis domestica mdo-let-7a-3p mature miRNA
Sequence 50 - CUGUACAGCCUCCUAGCUUUCC - 71
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45