Stem-loop sequence mdo-mir-15a

Accession

MI0005333 (change log)

Description

Monodelphis domestica miR-15a stem-loop

Gene family

MIPF0000006; mir-15

Stem-loop

        ggguaaa ua        ua         uggu   g 
5' ccuug       g  gcagcaca  augguuugu    uuu a
   |||||       |  ||||||||  |||||||||    |||  
3' ggaac       c  cgucgugu  uaccggacg    gga a
        auaaaaa uc        ua         ---u   a 

Deep sequencing

4678 reads, 40 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MonDom5; GCF_000002295.2): chr4: 318199416-318199498 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mdo-mir-15a

• mdo-mir-15a: chr4: 318199416-318199498 [+]
• mdo-mir-16-1: chr4: 318199560-318199649 [+]

Database links

• EntrezGene:Mir15a
• miRBase Tracker:MI0005333

Mature sequence mdo-miR-15a-5p

• Accession: MIMAT0004144
• Sequence: 14 - uagcagcacauaaugguuuguu - 35
• Deep sequencing: 4660 reads, 5 experiments
• Evidence: experimental; Microarray [1], PCR [1], Illumina [2]
• Predicted targets:
  • TargetScanVert:mdo-miR-15a-5p

Mature sequence mdo-miR-15a-3p

• Accession: MIMAT0026689
• Sequence: 51 - caggccauauugugcugccuca - 72
• Deep sequencing: 16 reads, 3 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:mdo-miR-15a-3p

References

1. PMID:17965199 "In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica" Devor EJ, Samollow PB J Hered. 99:66-72(2008).
2. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).