miRBase entry: mdo-mir-96

Stem-loop mdo-mir-96


Accession
MI0005336
Description
Monodelphis domestica mdo-mir-96 precursor miRNA
Gene family
MIPF0000072; mir-96


Sequence

1069 reads, 27 reads per million, 3 experiments
gaugucugcuuggcccguUUUGGCACUAGCACAUUUUUGCUucugucucucugcucugagcaaucauguguagugccaauaugggaaaagcaagaug
...((((((((..(((((.(((((((((.(((((..((((((..((......))...))))))..)))))))))))))).)))))..)))).)))).

Structure
gau    -    gg     U         G     UU      -cu  cu 
   gucu gcuu  cccgu UUGGCACUA CACAU  UUGCUu   gu  c
   |||| ||||  ||||| ||||||||| |||||  ||||||   ||   
   uaga cgaa  gggua aaccgugau gugua  aacgag   cg  u
--g    a    aa     u         -     cu      ucu  uc 


Annotation confidence Not enough data
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Genome context
chr8: 189667847-189667943 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from mdo-mir-96
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-96

Accession MIMAT0004147
Description Monodelphis domestica mdo-miR-96 mature miRNA
Sequence 19 - UUUGGCACUAGCACAUUUUUGCU - 41
Evidence experimental
Microarray [1], PCR [1]

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72