Stem-loop mdo-mir-425

Accession

MI0005342

Description

Monodelphis domestica mdo-mir-425 precursor miRNA

Gene family

MIPF0000242; mir-425

Sequence

4819 reads, 97 reads per million, 5 experiments

aaagugcuuuggAAUGACACGAUCACUCCCGUUGAgcggacagccaagaagccAUCGGGAAUAUCGUGUCCGUCCaaugcucuuu
((((.((.(((((..((((((((...(((((.((.((.............)))).)))))..))))))))..))))).)).))))

Structure

    u  u     AU        CAC     U  A  ggaca 
aaag gc uuggA  GACACGAU   UCCCG UG gc     g
|||| || |||||  ||||||||   ||||| || ||     c
uuuc cg aaCCU  CUGUGCUA   AGGGC Ac cg     c
    u  u     GC        -UA     U  -  aagaa 

Annotation confidence High

Genome context

chr6: 201968551-201968635 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mdo-mir-425

Mature mdo-miR-425-3p

• Accession: MIMAT0004153
• Description: Monodelphis domestica mdo-miR-425-3p mature miRNA
• Sequence: 54 - AUCGGGAAUAUCGUGUCCGUCC - 75
• Evidence: experimental ; PCR [1], Illumina [2]

Mature mdo-miR-425-5p

• Accession: MIMAT0026697
• Description: Monodelphis domestica mdo-miR-425-5p mature miRNA
• Sequence: 13 - AAUGACACGAUCACUCCCGUUGA - 35
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45