miRBase entry: mdo-mir-222a

Stem-loop mdo-mir-222a


Accession
MI0005347
Description
Monodelphis domestica mdo-mir-222a precursor miRNA
Gene family
MIPF0000051; mir-221


Sequence

8100 reads, 135 reads per million, 5 experiments
uguagauacugucucuuuccaucagcAGCUACAUCUGGCUACUGGGUCUCugauggcaucuuagagcu
........(((...........)))...........((((.(((((..((....))...)))))))))

Structure
uguagauacugucucuuuccaucagcAGCUACAUCU    A     -UC  u 
                                    GGCU CUGGG   UC g
                                    |||| |||||   ||  
                                    ucga gauuc   gg a
------------------------------------    -     uac  u 


Annotation confidence Not enough data
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Genome context
chr4: 17426716-17426783 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mdo-mir-222a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-222a

Accession MIMAT0004159
Description Monodelphis domestica mdo-miR-222a mature miRNA
Sequence 27 - AGCUACAUCUGGCUACUGGGUCUC - 50
Evidence experimental
Microarray [1], PCR [1]
Database links
Predicted targets

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72