Stem-loop mdo-mir-17

Accession

MI0005354

Description

Monodelphis domestica mdo-mir-17 precursor miRNA

Sequence

10513 reads, 177 reads per million, 5 experiments

gucagaauaauguCAAAGUGCUUACAGUGCAGGUAGUgauauguagaaucuACUGCAGUGAAGGCACUUGUAgcauuauagugac
((((..(((((((..((((((((.((.(((((.(((.............)))))))).)).))))))))...)))))))..))))

Structure

    ga       -CA        A  G     G   Ugaua 
guca  auaaugu   AAGUGCUU CA UGCAG UAG     u
||||  |||||||   |||||||| || ||||| |||     g
cagu  uauuacg   UUCACGGA GU ACGUC Auc     u
    ga       AUG        A  G     -   uaaga 

Annotation confidence High

Genome context

chr7: 108468894-108468978 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from mdo-mir-17

Mature mdo-miR-17-5p

• Accession: MIMAT0004165
• Description: Monodelphis domestica mdo-miR-17-5p mature miRNA
• Sequence: 14 - CAAAGUGCUUACAGUGCAGGUAGU - 37
• Evidence: experimental ; Microarray [1], PCR [1]

Mature mdo-miR-17-3p

• Accession: MIMAT0004166
• Description: Monodelphis domestica mdo-miR-17-3p mature miRNA
• Sequence: 52 - ACUGCAGUGAAGGCACUUGUA - 72
• Evidence: experimental ; Microarray [1], PCR [1]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72