miRBase entry: mdo-mir-17

Stem-loop mdo-mir-17


Accession
MI0005354
Description
Monodelphis domestica mdo-mir-17 precursor miRNA
Gene family
MIPF0000001; mir-17


Sequence

10513 reads, 181 reads per million, 5 experiments
gucagaauaauguCAAAGUGCUUACAGUGCAGGUAGUgauauguagaaucuACUGCAGUGAAGGCACUUGUAgcauuauagugac
((((..(((((((..((((((((.((.(((((.(((.............)))))))).)).))))))))...)))))))..))))

Structure
    ga       -CA        A  G     G   Ugaua 
guca  auaaugu   AAGUGCUU CA UGCAG UAG     u
||||  |||||||   |||||||| || ||||| |||     g
cagu  uauuacg   UUCACGGA GU ACGUC Auc     u
    ga       AUG        A  G     -   uaaga 


Annotation confidence High
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Genome context
chr7: 108468894-108468978 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from mdo-mir-17
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-17-5p

Accession MIMAT0004165
Description Monodelphis domestica mdo-miR-17-5p mature miRNA
Sequence 14 - CAAAGUGCUUACAGUGCAGGUAGU - 37
Evidence experimental
Microarray [1], PCR [1]

Mature mdo-miR-17-3p

Accession MIMAT0004166
Description Monodelphis domestica mdo-miR-17-3p mature miRNA
Sequence 52 - ACUGCAGUGAAGGCACUUGUA - 72
Evidence experimental
Microarray [1], PCR [1]

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72