Stem-loop sequence mdo-mir-92a-1

Accession

MI0005359 (change log)

Description

Monodelphis domestica miR-92a-1 stem-loop

Gene family

MIPF0000013; mir-25

Stem-loop

   ---cu   uac            c   u        gu uc 
5'      uuc   acagguugggau agu gcaaugcu  g  u
        |||   |||||||||||| ||| ||||||||  |   
3'      gag   uguccggcccug uca cguuauga  u  g
   gguuu   --u            u   -        ug cu 

Deep sequencing

97940 reads, 1.4e+03 reads per million, 5 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (MonDom5; GCF_000002295.2): chr7: 108468191-108468268 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mdo-mir-92a-1

• mdo-mir-17: chr7: 108468894-108468978 [-]
• mdo-mir-18a: chr7: 108468760-108468831 [-]
• mdo-mir-19a: chr7: 108468609-108468689 [-]
• mdo-mir-20a: chr7: 108468430-108468531 [-]
• mdo-mir-19b-1: chr7: 108468305-108468393 [-]
• mdo-mir-92a-1: chr7: 108468191-108468268 [-]

Database links

• EntrezGene:Mir92
• miRBase Tracker:MI0005359

Mature sequence mdo-miR-92a-1-5p

• Accession: MIMAT0026709
• Sequence: 11 - agguugggaucaguugcaaugcu - 33
• Deep sequencing: 168 reads, 5 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:mdo-miR-92a-1-5p

Mature sequence mdo-miR-92a-3p

• Accession: MIMAT0004171
• Sequence: 48 - uauugcacuugucccggccugu - 69
• Deep sequencing: 160564 reads, 5 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00003768C5_13616
• Predicted targets:
  • TargetScanVert:mdo-miR-92a-3p

References

1. PMID:17965199 "In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica" Devor EJ, Samollow PB J Hered. 99:66-72(2008).
2. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).