Stem-loop sequence mdo-let-7a-1

Accession

MI0005360 (change log)

Description

Monodelphis domestica let-7a-1 stem-loop

Gene family

MIPF0000002; let-7

Stem-loop

   ucucca  g     u   gu                uuagggucacac 
5'       cu uggga gag  aguagguuguauaguu            c
         || ||||| |||  ||||||||||||||||            c
3'       ga auucu uuc  ucaucuaacauaucaa            a
   ------  a     -   ug                uagagggucacc 

Deep sequencing

7723408 reads, 1.26e+05 reads per million, 5 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (MonDom5; GCF_000002295.2): chr6: 256413193-256413284 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mdo-let-7a-1

• mdo-let-7a-1: chr6: 256413193-256413284 [-]
• mdo-let-7f-1: chr6: 256412444-256412530 [-]
• mdo-let-7d: chr6: 256407623-256407728 [-]

Database links

• EntrezGene:Mirlet7a-1
• miRBase Tracker:MI0005360

Mature sequence mdo-let-7a-5p

• Accession: MIMAT0004141
• Sequence: 15 - ugagguaguagguuguauaguu - 36
• Deep sequencing: 23084043 reads, 5 experiments
• Evidence: experimental; Microarray [1], PCR [1]
• Database links:
  • RNAcentral:URS0000416056_13616
• Predicted targets:
  • TargetScanVert:mdo-let-7a-5p

References

1. PMID:17965199 "In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica" Devor EJ, Samollow PB J Hered. 99:66-72(2008).