Stem-loop sequence mdo-let-7d

Accession

MI0005362 (change log)

Description

Monodelphis domestica let-7d stem-loop

Gene family

MIPF0000002; let-7

Stem-loop

   ----aau    u       a              c      -------uua      g 
5'        gggc ccuagga gagguaguagguug auaguu          gggcag g
          |||| ||||||| |||||||||||||| ||||||          |||||| a
3'        cucg ggauucu uuccgucguccaac uaucaa          cccguu u
   uuauuau    -       -              a      uugaggaaca      u 

Deep sequencing

122986 reads, 1.66e+03 reads per million, 5 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (MonDom5; GCF_000002295.2): chr6: 256407623-256407728 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mdo-let-7d

• mdo-let-7a-1: chr6: 256413193-256413284 [-]
• mdo-let-7f-1: chr6: 256412444-256412530 [-]
• mdo-let-7d: chr6: 256407623-256407728 [-]

Database links

• EntrezGene:Mirlet7d
• miRBase Tracker:MI0005362

Mature sequence mdo-let-7d

• Accession: MIMAT0004172
• Sequence: 16 - agagguaguagguugcauagu - 36
• Deep sequencing: 121786 reads, 5 experiments
• Evidence: experimental; PCR [1]
• Database links:
  • RNAcentral:URS00002AABED_13616
• Predicted targets:
  • TargetScanVert:mdo-let-7d

References

1. PMID:17965199 "In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica" Devor EJ, Samollow PB J Hered. 99:66-72(2008).