Stem-loop sequence mdo-mir-23b

Accession

MI0005366 (change log)

Description

Monodelphis domestica miR-23b stem-loop

Gene family

MIPF0000027; mir-23

Stem-loop

         u   --          -  c      gugacu 
5' ggcugc ugg  guuccuggca ug ugauuu      u
   |||||| |||  |||||||||| || ||||||       
3' ccgacg acc  uagggaccgu ac acuaaa      a
         c   au          u  -      aguaga 

Deep sequencing

79596 reads, 940 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MonDom5; GCF_000002295.2): chr6: 17695901-17695974 [+]
• Overlapping transcripts:

  sense

  ENSMODT00000003466 ; C9orf3-201; intron 17

Clustered miRNAs

< 10kb from mdo-mir-23b

• mdo-mir-23b: chr6: 17695901-17695974 [+]
• mdo-mir-27b: chr6: 17696090-17696186 [+]
• mdo-mir-24-1: chr6: 17696508-17696564 [+]

Database links

• EntrezGene:Mir23b
• miRBase Tracker:MI0005366

Mature sequence mdo-miR-23b-5p

• Accession: MIMAT0026713
• Sequence: 9 - ggguuccuggcaugcugauuu - 29
• Deep sequencing: 394 reads, 5 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:mdo-miR-23b-5p

Mature sequence mdo-miR-23b-3p

• Accession: MIMAT0004176
• Sequence: 46 - aucacauugccagggauuacc - 66
• Deep sequencing: 79194 reads, 5 experiments
• Evidence: experimental; Microarray [1], PCR [1], Illumina [2]
• Database links:
  • RNAcentral:URS0000183BED_13616
• Predicted targets:
  • TargetScanVert:mdo-miR-23b-3p

References

1. PMID:17965199 "In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica" Devor EJ, Samollow PB J Hered. 99:66-72(2008).
2. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).