miRBase entry: mdo-mir-25

Stem-loop mdo-mir-25


Accession
MI0005370
Description
Monodelphis domestica mdo-mir-25 precursor miRNA
Gene family
MIPF0000013; mir-25


Sequence

8286 reads, 155 reads per million, 5 experiments
ggccaguguugagaggcggagacuugggcaauugcugaacucugcccugggCAUUGCACUUGUCUCGGUCUGAcagugcuggc
.((((((((((..((((.(((((..(.(((((.(((.(.........).)))))))).)..))))).))))..))))))))))

Structure
g          ag    g     uu g     u   g acu 
 gccaguguug  aggc gagac  g gcaau gcu a   c
 ||||||||||  |||| |||||  | ||||| ||| |   u
 cggucgugac  UCUG CUCUG  C CGUUA Cgg u   g
-          AG    G     UU A     -   g ccc 


Annotation confidence Not enough data
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Genome context
chr2: 257690280-257690362 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mdo-mir-25
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-25

Accession MIMAT0004179
Description Monodelphis domestica mdo-miR-25 mature miRNA
Sequence 52 - CAUUGCACUUGUCUCGGUCUGA - 73
Evidence not_experimental

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72