Stem-loop sequence mdo-mir-302c

Accession

MI0005372 (change log)

Description

Monodelphis domestica miR-302c stem-loop

Gene family

MIPF0000071; mir-302

Stem-loop

   --   uu             c    acgu 
5'   gcu  aacauggggguac ugcu    a
     |||  ||||||||||||| ||||    a
3'   uga  uuguaccuucgug auga    u
   gg   cu             a    aaaa 

Deep sequencing

17 reads, 0 reads per million, 3 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (MonDom5; GCF_000002295.2): chr5: 66074864-66074922 [-]
• Overlapping transcripts:

  antisense

  ENSMODT00000007165 ; LARP7-201; intron 8

Clustered miRNAs

< 10kb from mdo-mir-302c

• mdo-mir-302b: chr5: 66075008-66075078 [-]
• mdo-mir-302c: chr5: 66074864-66074922 [-]
• mdo-mir-302a: chr5: 66074649-66074718 [-]
• mdo-mir-302d: chr5: 66074486-66074556 [-]
• mdo-mir-367: chr5: 66074337-66074399 [-]

Database links

• EntrezGene:Mir302c
• miRBase Tracker:MI0005372

Mature sequence mdo-miR-302c

• Accession: MIMAT0004181
• Sequence: 37 - uaagugcuuccauguuucagu - 57
• Deep sequencing: 17 reads, 3 experiments
• Evidence: by similarity; MI0000773
• Predicted targets:
  • TargetScanVert:mdo-miR-302c

References

1. PMID:17965199 "In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica" Devor EJ, Samollow PB J Hered. 99:66-72(2008).