Stem-loop sequence mdo-mir-302d

Accession

MI0005374 (change log)

Description

Monodelphis domestica miR-302d stem-loop

Gene family

MIPF0000071; mir-302

Stem-loop

   --  u u    u          ug    cugugau 
5'   cc c gcuu aacauggaag  cuug       u
     || | |||| ||||||||||  ||||       u
3'   gg g ugag uuguaccuuc  gaau       u
   gu  u u    u          gu    uaaaaaa 

Deep sequencing

21 reads, 0 reads per million, 3 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (MonDom5; GCF_000002295.2): chr5: 66074486-66074556 [-]
• Overlapping transcripts:

  antisense

  ENSMODT00000007165 ; LARP7-201; intron 8

Clustered miRNAs

< 10kb from mdo-mir-302d

• mdo-mir-302b: chr5: 66075008-66075078 [-]
• mdo-mir-302c: chr5: 66074864-66074922 [-]
• mdo-mir-302a: chr5: 66074649-66074718 [-]
• mdo-mir-302d: chr5: 66074486-66074556 [-]
• mdo-mir-367: chr5: 66074337-66074399 [-]

Database links

• EntrezGene:Mir302d
• miRBase Tracker:MI0005374

Mature sequence mdo-miR-302d

• Accession: MIMAT0004183
• Sequence: 44 - uaagugcuuccauguuugagu - 64
• Deep sequencing: 18 reads, 3 experiments
• Evidence: by similarity; MI0000774
• Predicted targets:
  • TargetScanVert:mdo-miR-302d

References

1. PMID:17965199 "In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica" Devor EJ, Samollow PB J Hered. 99:66-72(2008).