Stem-loop sequence bta-mir-34a

Accession

MI0005464 (change log)

Description

Bos taurus miR-34a stem-loop

Gene family

MIPF0000039; mir-34

Literature search

20 open access papers mention bta-mir-34a
(79 sentences)

Stem-loop

   gg -    u   -  ug     uu        -   a          guga   a 
5'   c cagc gug ag  uuucu  ggcagugu cuu gcugguuguu    gua u
     | |||| ||| ||  |||||  |||||||| ||| ||||||||||    |||  
3'   g guug cac uc  gaaga  ccgucaua gaa cgacuaacga    cgu a
   gg u    -   g  gu     uc        u   -          agga   a 

Deep sequencing

1471 reads, 4.29 reads per million, 70 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr16: 45359550-45359656 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR34A
• RNAcentral:URS000075B569_9913
• miRBase Tracker:MI0005464

Mature sequence bta-miR-34a

• Accession: MIMAT0004340
• Sequence: 22 - uggcagugucuuagcugguugu - 43
• Deep sequencing: 1409 reads, 70 experiments
• Evidence: experimental; cloned [1]
• Predicted targets:
  • TargetScanVert:bta-miR-34a

References

1. PMID:17306260 "Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland" Gu Z, Eleswarapu S, Jiang H FEBS Lett. 581:981-988(2007).