Stem-loop mmu-mir-883a

Accession

MI0005476

Symbol

MGI: Mir883a

Description

Mus musculus mmu-mir-883a precursor miRNA

Gene family

MIPF0000389; mir-883

Literature search

7 open access papers mention mmu-mir-883a
(8 sentences)

Sequence

8580 reads, 2603 reads per million, 36 experiments

gcacuauaaUGCUGAGAGAAGUAGCAGUUACuuuauucuauaagUAACUGCAACAGCUCUCAGUAUuguaaggcuc
((..((((((((((((((..((.((((((((((........)))))))))).))..))))))))))))))..))..

Structure

--  ac              AA  A          uau 
  gc  uauaaUGCUGAGAG  GU GCAGUUACuu   u
  ||  ||||||||||||||  || ||||||||||    
  cg  auguUAUGACUCUC  CA CGUCAAUgaa   c
cu  ga              GA  A          uau 

Annotation confidence High

Genome context

chrX: 66780758-66780833 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from mmu-mir-883a

Mature mmu-miR-883a-5p

• Accession: MIMAT0004848
• Description: Mus musculus mmu-miR-883a-5p mature miRNA
• Sequence: 10 - UGCUGAGAGAAGUAGCAGUUAC - 31
• Evidence: experimental ; cloned [1], Illumina [3-4]

Mature mmu-miR-883a-3p

• Accession: MIMAT0004849
• Description: Mus musculus mmu-miR-883a-3p mature miRNA
• Sequence: 45 - UAACUGCAACAGCUCUCAGUAU - 66
• Evidence: experimental ; cloned [1], 454 [2], Illumina [3-4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


3. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


4. PubMed ID: 17989215
   RNA sequence analysis defines Dicer's role in mouse embryonic stem cells
   "Calabrese JM, Seila AC, Yeo GW, Sharp PA"
   "Proc Natl Acad Sci U S A (2007) 104:18097-18102