miRBase entry: mmu-mir-466d

Stem-loop mmu-mir-466d


Accession
MI0005546
Symbol
MGI: Mir466d
Description
Mus musculus mmu-mir-466d precursor miRNA
Gene family
MIPF0000316; mir-467

Literature search
30 open access papers mention mmu-mir-466d
(97 sentences)

Sequence

17288 reads, 357 reads per million, 100 experiments
cauguguguuUGUGUGUGCGUACAUGUACAUGuguguauaugaauauacaUAUACAUACACGCACACAUAGauacgcacgcacacacacacacagg
..(((((((.(((((((((((((((((.(.((((((((((((......)))))))))))).)...)))).).)))))))))))).)))))))....

Structure
--ca       u            - -    --A A            aa 
    ugugugu UGUGUGUGCGUA C AUGU   C UGuguguauaug  u
    ||||||| |||||||||||| | ||||   | ||||||||||||   
    acacaca acacgcacgcau G UACA   G ACAUACAUAUac  a
ggac       c            a A    CAC C            au 


Annotation confidence High
Do you think this miRNA is real?
Comments
miR-466d-3p reported in [1] has an additional 3' U base which is inconsistent with the current genome sequence (as shown here).

Genome context
chr2: 10511967-10512062 [+]
Clustered miRNAs
22 other miRNAs are < 10 kb from mmu-mir-466d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-466d-5p

Accession MIMAT0004930
Description Mus musculus mmu-miR-466d-5p mature miRNA
Sequence 11 - UGUGUGUGCGUACAUGUACAUG - 32
Evidence experimental
cloned [1], Illumina [3-4]
Database links
Predicted targets

Mature mmu-miR-466d-3p

Accession MIMAT0004931
Description Mus musculus mmu-miR-466d-3p mature miRNA
Sequence 51 - UAUACAUACACGCACACAUAG - 71
Evidence experimental
cloned [1], 454 [2], Illumina [3-4]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  3. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  4. PubMed ID: 17989215
    RNA sequence analysis defines Dicer's role in mouse embryonic stem cells
    "Calabrese JM, Seila AC, Yeo GW, Sharp PA"
    "Proc Natl Acad Sci U S A (2007) 104:18097-18102