Stem-loop sequence hsa-mir-940

Accession

MI0005762 (change log)

Symbol

HGNC:MIR940

Description

Homo sapiens miR-940 stem-loop

Gene family

MIPF0000540; mir-940

Literature search

36 open access papers mention hsa-mir-940
(333 sentences)

Stem-loop

      a   g         cccca         -   gg  -ag  --  gug 
5' gug ggu ugggcccgg     ggagcgggg ccu  gc   cc  cc   u
   ||| ||| |||||||||     ||||||||| |||  ||   ||  ||   g
3' cac cca guccgggcc     ccucgcccc ggg  cg   gg  gg   u
      c   -         -----         c   -a  gaa  aa  agu 

Deep sequencing

4714 reads, 0.8 reads per million, 125 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr16: 2271747-2271840 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from hsa-mir-940

• hsa-mir-3677: chr16: 2270713-2270772 [+]
• hsa-mir-940: chr16: 2271747-2271840 [+]
• hsa-mir-4717: chr16: 2274620-2274691 [+]

Database links

• EntrezGene:MIR940
• HGNC:MIR940
• RNAcentral:URS0000699E19_9606
• miRBase Tracker:MI0005762

Mature sequence hsa-miR-940

• Accession: MIMAT0004983
• Sequence: 60 - aaggcagggcccccgcucccc - 80
• Deep sequencing: 4642 reads, 127 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000041FA2C_9606
• Predicted targets:
  • TargetMiner:hsa-miR-940
  • TargetScanVert:hsa-miR-940
  • miRDB:hsa-miR-940
  • microrna.org:hsa-miR-940

References

1. PMID:17616659 "Patterns of known and novel small RNAs in human cervical cancer" Lui WO, Pourmand N, Patterson BK, Fire A Cancer Res. 67:6031-6043(2007).