Stem-loop sequence dme-mir-954

Accession

MI0005806 (change log)

Description

Drosophila melanogaster miR-954 stem-loop

Literature search

2 open access papers mention dme-mir-954
(2 sentences)

Stem-loop

   ua   aca      uuucu           -  u   ua    u 
5'   caa   caagau     ggguguugcgu ug gug  ccug g
     |||   ||||||     ||||||||||| || |||  ||||  
3'   guu   guucua     ccuacaacgua ac uau  ggac u
   ua   --c      cauuc           c  u   gc    a 

Deep sequencing

2188 reads, 24.5 reads per million, 49 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Release_6; GCA_000001215.4): chr4: 626126-626212 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS0000317D76_7227
• miRBase Tracker:MI0005806

Mature sequence dme-miR-954-5p

• Accession: MIMAT0005465
• Previous IDs: dme-miR-954
• Sequence: 17 - ucuggguguugcguugugugu - 37
• Deep sequencing: 1844 reads, 48 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS000011F77A_7227
• Predicted targets:
  • TargetScanFly:dme-miR-954
  • microrna.org:dme-miR-954-5p

Mature sequence dme-miR-954-3p

• Accession: MIMAT0020846
• Sequence: 55 - uucacaugcaacaucccuuac - 75
• Deep sequencing: 340 reads, 31 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS00001BDFD7_7227

References

1. PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).