Stem-loop dme-mir-957

Accession

MI0005811

Description

Drosophila melanogaster dme-mir-957 precursor miRNA

Gene family

MIPF0000723; mir-957

Literature search

2 open access papers mention dme-mir-957
(2 sentences)

Sequence

415193 reads, 3995 reads per million, 42 experiments

uguccacaauagacCUUAGUUUUCGACGUGUUUUGGUgugcuggggaguucuauuccgauUGAAACCGUCCAAAACUGAGGCcaacugugaggcgc
.(((((((...(.((((((((((.((((.(((((((.....(.((((......)))).)))))))))))).)))))))))).)...)))).)))..

Structure

-u   -    aua a          C    U       Ugugc g    gu 
  guc caca   g cCUUAGUUUU GACG GUUUUGG     u ggga  u
  ||| ||||   | |||||||||| |||| |||||||     | ||||   
  cgg gugu   c GGAGUCAAAA CUGC CAAAGUu     a ccuu  c
cg   a    caa C          C    -       ----- g    au 

Annotation confidence High

Genome context

chr3L: 22518196-22518291 [-]

Mature dme-miR-957-3p

• Accession: MIMAT0005470
• Description: Drosophila melanogaster dme-miR-957-3p mature miRNA
• Sequence: 61 - UGAAACCGUCCAAAACUGAGGC - 82
• Evidence: experimental ; 454 [1], Illumina [2]

Mature dme-miR-957-5p

• Accession: MIMAT0020851
• Description: Drosophila melanogaster dme-miR-957-5p mature miRNA
• Sequence: 15 - CUUAGUUUUCGACGUGUUUUGGU - 37
• Evidence: not_experimental

References

1. PubMed ID: 17989254
   Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
   "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
   "Genome Res (2007) 17:1850-1864


2. PubMed ID: 17989255
   Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
   "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
   "Genome Res (2007) 17:1865-1879