miRBase entry: dme-mir-375

Stem-loop dme-mir-375


Accession
MI0005813
Description
Drosophila melanogaster dme-mir-375 precursor miRNA
Gene family
MIPF0000114; mir-375

Literature search
5 open access papers mention dme-mir-375
(6 sentences)

Sequence

184966 reads, 1502 reads per million, 47 experiments
ccgggcagcgaauuACUUGGGCCAAGGGAAUGCAAACUgugaucaucccgaaagUUUGUUCGUUUGGCUUAAGUUAuuuucauguccgacu
.(((((((.((((.((((((((((((.((..(((((((..............))))))))).)))))))))))).)))).).))))))...

Structure
--c      - c    u            G  AU       gugauc 
   cgggca g gaau ACUUGGGCCAAG GA  GCAAACU      a
   |||||| | |||| |||||||||||| ||  |||||||       
   gccugu c uuuA UGAAUUCGGUUU CU  UGUUUga      u
uca      a u    U            G  --       aagccc 


Annotation confidence High
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Genome context
chr2L: 857542-857632 [+]

Database links

Mature dme-miR-375-3p

Accession MIMAT0005472
Description Drosophila melanogaster dme-miR-375-3p mature miRNA
Sequence 55 - UUUGUUCGUUUGGCUUAAGUUA - 76
Evidence experimental
454 [1-2], Illumina [2]
Database links
Predicted targets

Mature dme-miR-375-5p

Accession MIMAT0020853
Description Drosophila melanogaster dme-miR-375-5p mature miRNA
Sequence 15 - ACUUGGGCCAAGGGAAUGCAAACU - 38
Evidence not_experimental
Database links

References

  1. PubMed ID: 17989254
    Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
    "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
    "Genome Res (2007) 17:1850-1864

  2. PubMed ID: 17989255
    Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
    "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
    "Genome Res (2007) 17:1865-1879