miRBase entry: dme-mir-963

Stem-loop dme-mir-963


Accession
MI0005818
Description
Drosophila melanogaster dme-mir-963 precursor miRNA
Gene family
MIPF0001035; mir-963


Sequence

1589 reads, 375 reads per million, 47 experiments
uuagucuaaucuaaaACAAGGUAAAUAUCAGGUUGUUUCcuguauucgaucgaAACAUCUGUAUAUACCUUUGUUccgauuggacaaaa
...((((((((...(((((((((.(((.(((((.(((((............))))))))))))).)))).)))))..))))))))....

Structure
-uua        uaa     -    A   U     U     cugua 
    gucuaauc   aACAA GGUA AUA CAGGU GUUUC     u
    ||||||||   ||||| |||| ||| ||||| |||||      
    cagguuag   UUGUU CCAU UAU GUCUA CAAag     u
aaaa        -cc     U    A   -     -     cuagc 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr2L: 5641990-5642078 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from dme-mir-963
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dme-miR-963-5p

Accession MIMAT0005477
Description Drosophila melanogaster dme-miR-963-5p mature miRNA
Sequence 16 - ACAAGGUAAAUAUCAGGUUGUUUC - 39
Evidence experimental
454 [1]
Database links
Predicted targets

Mature dme-miR-963-3p

Accession MIMAT0020858
Description Drosophila melanogaster dme-miR-963-3p mature miRNA
Sequence 54 - AACAUCUGUAUAUACCUUUGUU - 75
Evidence not_experimental
Database links

References

  1. PubMed ID: 17989254
    Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
    "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
    "Genome Res (2007) 17:1850-1864