Stem-loop dme-mir-968

Accession

MI0005825

Description

Drosophila melanogaster dme-mir-968 precursor miRNA mir-968

Gene
family

RF03495; mir-968

Literature search

1 open access papers mention dme-mir-968
(1 sentences)

Sequence

4590 reads, 302 reads per million, 29 experiments

ugauggaagcuuccuUAAGUAGUAUCCAUUAAAGGGUUGuucucaacaugcaaaucaACCUUUUGAUGUACUACUUUAAgaaucuccaguua
...((((.(.(((...((((((((..(((((((((((((................)))))))))))))))))))))...))).)))))....

Structure

-uga    a c   cuU        UC             uucucaa 
    ugga g uuc   AAGUAGUA  CAUUAAAGGGUUG       c
    |||| | |||   ||||||||  |||||||||||||        
    accu c aag   UUCAUCAU  GUAGUUUUCCAac       a
auug    - u   AAU        --             uaaacgu 

Annotation confidence High

Genome context

chr2L: 13747748-13747839 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dme-mir-968

Mature dme-miR-968-5p

• Accession: MIMAT0005484
• Description: Drosophila melanogaster dme-miR-968-5p mature miRNA
• Sequence: 16 - UAAGUAGUAUCCAUUAAAGGGUUG - 39
• Evidence: experimental ; 454 [1], Illumina [2]

Mature dme-miR-968-3p

• Accession: MIMAT0020865
• Description: Drosophila melanogaster dme-miR-968-3p mature miRNA
• Sequence: 58 - ACCUUUUGAUGUACUACUUUAA - 79
• Evidence: not_experimental

References

1. PubMed ID: 17989254
   Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
   "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
   "Genome Res (2007) 17:1850-1864


2. PubMed ID: 17989255
   Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
   "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
   "Genome Res (2007) 17:1865-1879