Stem-loop dme-mir-969

Accession

MI0005826

Description

Drosophila melanogaster dme-mir-969 precursor miRNA

Gene family

MIPF0000879; mir-969

Literature search

1 open access papers mention dme-mir-969
(12 sentences)

Sequence

639 reads, 32 reads per million, 32 experiments

agucucuguccuacguccGAGUUCCACUAAGCAAGUUUUgagaucguuuuaaaaacaaaAACUUGACACGUUGAGCUCGUucgugggauggacu
(((((..((((((((..(((((((.((....((((((((..................))))))))....)).)))))))..)))))))))))))

Structure

     cu        uc       C  UAAG        gagaucgu 
agucu  guccuacg  cGAGUUC AC    CAAGUUUU        u
|||||  ||||||||  ||||||| ||    ||||||||         
ucagg  uagggugc  GCUCGAG UG    GUUCAAaa        u
     --        uU       U  CACA        acaaaaau 

Annotation confidence High

Genome context

chrX: 18124357-18124450 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dme-mir-969

Mature dme-miR-969-5p

• Accession: MIMAT0005485
• Description: Drosophila melanogaster dme-miR-969-5p mature miRNA
• Sequence: 19 - GAGUUCCACUAAGCAAGUUUU - 39
• Evidence: experimental ; 454 [1], Illumina [2]

Mature dme-miR-969-3p

• Accession: MIMAT0020866
• Description: Drosophila melanogaster dme-miR-969-3p mature miRNA
• Sequence: 60 - AACUUGACACGUUGAGCUCGU - 80
• Evidence: not_experimental

References

1. PubMed ID: 17989254
   Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
   "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
   "Genome Res (2007) 17:1850-1864


2. PubMed ID: 17989255
   Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
   "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
   "Genome Res (2007) 17:1865-1879