Stem-loop sequence dme-mir-977

Accession

MI0005834 (change log)

Description

Drosophila melanogaster miR-977 stem-loop

Gene family

MIPF0000931; mir-977

Literature search

1 open access papers mention dme-mir-977
(79 sentences)

Stem-loop

   cgaaucaacaa    gg    c          uc       a    uucagug 
5'            acaa  uaug uuuagauaac  gaauauc cauc       u
              ||||  |||| ||||||||||  ||||||| ||||       u
3'            uguu  guac aaaucuguug  cuuauag guag       c
   ----------a    uu    u          ca       a    ucuaaag 

Deep sequencing

6221 reads, 765 reads per million, 31 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Release_6; GCA_000001215.4): chrX: 19559022-19559120 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dme-mir-977

• dme-mir-972: chrX: 19551152-19551242 [+]
• dme-mir-9369: chrX: 19551318-19551379 [+]
• dme-mir-973: chrX: 19551528-19551628 [+]
• dme-mir-974: chrX: 19551678-19551778 [+]
• dme-mir-2499: chrX: 19557008-19557103 [+]
• dme-mir-4966: chrX: 19558370-19558496 [+]
• dme-mir-975: chrX: 19558753-19558843 [+]
• dme-mir-976: chrX: 19558895-19558991 [+]
• dme-mir-977: chrX: 19559022-19559120 [+]
• dme-mir-978: chrX: 19561236-19561327 [+]
• dme-mir-979: chrX: 19561837-19561931 [+]

Database links

• RNAcentral:URS000004AC1C_7227
• miRBase Tracker:MI0005834

Mature sequence dme-miR-977-5p

• Accession: MIMAT0020874
• Sequence: 25 - uagauaacucgaauaucacauc - 46
• Deep sequencing: 139 reads, 19 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS00001AE37C_7227

Mature sequence dme-miR-977-3p

• Accession: MIMAT0005493
• Previous IDs: dme-miR-977
• Sequence: 66 - ugagauauucacguugucuaa - 86
• Deep sequencing: 6036 reads, 27 experiments
• Evidence: experimental; 454 [1-2], Illumina [2]
• Database links:
  • RNAcentral:URS00005B6581_7227
• Predicted targets:
  • TargetScanFly:dme-miR-977
  • microrna.org:dme-miR-977-3p

References

1. PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
2. PMID:17989255 "Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes" Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M Genome Res. 17:1865-1879(2007).