miRBase entry: dme-mir-995

Stem-loop dme-mir-995


Accession
MI0005856
Description
Drosophila melanogaster dme-mir-995 precursor miRNA
Gene family
MIPF0000895; mir-995

Literature search
4 open access papers mention dme-mir-995
(17 sentences)

Sequence

207753 reads, 4087 reads per million, 49 experiments
caccugcaccccgcagCCCGAAUUAUGUGGGAGCUGCGccguuuccguaauccgUAGCACCACAUGAUUCGGCUUcgugguacaggauau
..((((.(((.((.((((.(((((((((((..((((((..(((.....))).)))))).))))))))))))))).)).))).))))....

Structure
--ca    c   c  c    C           GA      cc   u 
    ccug acc cg agCC GAAUUAUGUGG  GCUGCG  guu c
    |||| ||| || |||| |||||||||||  ||||||  ||| c
    ggac ugg gc UCGG CUUAGUACACC  CGAUgc  uaa g
uaua    a   u  U    -           -A      -c   u 


Annotation confidence High
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Genome context
chr3R: 20735923-20736012 [+]

Database links

Mature dme-miR-995-5p

Accession MIMAT0010206
Description Drosophila melanogaster dme-miR-995-5p mature miRNA
Sequence 17 - CCCGAAUUAUGUGGGAGCUGCG - 38
Evidence experimental
454 [3]
Database links

Mature dme-miR-995-3p

Accession MIMAT0005514
Description Drosophila melanogaster dme-miR-995-3p mature miRNA
Sequence 55 - UAGCACCACAUGAUUCGGCUU - 75
Evidence experimental
454 [1-3], Illumina [2]
Database links
Predicted targets

References

  1. PubMed ID: 17989254
    Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
    "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
    "Genome Res (2007) 17:1850-1864

  2. PubMed ID: 17989255
    Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
    "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
    "Genome Res (2007) 17:1865-1879

  3. PubMed ID: 18463636
    Drosophila endogenous small RNAs bind to Argonaute 2 in somatic cells
    "Kawamura Y, Saito K, Kin T, Ono Y, Asai K, Sunohara T, Okada TN, Siomi MC, Siomi H"
    "Nature (2008) 453:793-797