Stem-loop dme-mir-252

Accession

MI0005858

Description

Drosophila melanogaster dme-mir-252 precursor miRNA mir-252

Gene
family

RF00838; mir-252

Literature search

8 open access papers mention dme-mir-252
(144 sentences)

Sequence

215106 reads, 6437 reads per million, 49 experiments

accaaguucgcuuucCUAAGUACUAGUGCCGCAGGAGuuagguucguguccgcaauaccUCCUGCUGCCCAAGUGCUUAUUaaagcggcgagu
.......(((((((..((((((((.(.((.(((((((....(((((....)).)))..))))))).)).).))))))))..))))))).....

Structure

accaagu       cC        A U  C       uuag   -  u 
       ucgcuuu  UAAGUACU G GC GCAGGAG    guu cg g
       |||||||  |||||||| | || |||||||    ||| ||  
       ggcgaaa  AUUCGUGA C CG CGUCCUc    uaa gc u
--ugagc       UU        A C  U       --ca   c  c 

Annotation confidence High

Genome context

chr3R: 13464219-13464311 [-]

Mature dme-miR-252-5p

• Accession: MIMAT0005516
• Description: Drosophila melanogaster dme-miR-252-5p mature miRNA
• Sequence: 16 - CUAAGUACUAGUGCCGCAGGAG - 37
• Evidence: experimental ; 454 [1-2], Illumina [2]

Mature dme-miR-252-3p

• Accession: MIMAT0020896
• Description: Drosophila melanogaster dme-miR-252-3p mature miRNA
• Sequence: 60 - UCCUGCUGCCCAAGUGCUUAUU - 81
• Evidence: not_experimental

References

1. PubMed ID: 17989254
   Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
   "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
   "Genome Res (2007) 17:1850-1864


2. PubMed ID: 17989255
   Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
   "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
   "Genome Res (2007) 17:1865-1879