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miRBase |
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Stem-loop sequence dme-mir-1000 |
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Accession | MI0005862 (change log) | ||||
Description | Drosophila melanogaster miR-1000 stem-loop | ||||
Gene family | MIPF0000701; mir-1000 | ||||
Literature search |
4 open access papers mention dme-mir-1000 | ||||
Stem-loop |
------- gc u a u u a -- ca 5' gacgcuu ca ug ua uguccug c cagcagu auuguaa c ||||||| || || || ||||||| | ||||||| ||||||| u 3' cugcgag gu ac au acggggc g gucguca ugauauu a acgauua uu u a u u g uu au |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Genome context |
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Database links |
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Mature sequence dme-miR-1000-5p |
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Accession | MIMAT0005520 |
Previous IDs | dme-miR-1000 |
Sequence |
15 - auauuguccugucacagcagu - 35 |
Deep sequencing | 37077 reads, 45 experiments |
Evidence | experimental; 454 [1-2], Illumina [2] |
Database links |
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Predicted targets |
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Mature sequence dme-miR-1000-3p |
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Accession | MIMAT0020900 |
Sequence |
60 - cugcugggucggggcauuaaca - 81 |
Deep sequencing | 1099 reads, 41 experiments |
Evidence | not experimental |
Database links |
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References |
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1 |
PMID:17989254
"Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs"
Genome Res. 17:1850-1864(2007).
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2 |
PMID:17989255
"Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes"
Genome Res. 17:1865-1879(2007).
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