Stem-loop sequence tae-MIR164

Accession

MI0006173 (change log)

Description

Triticum aestivum miR164 stem-loop

Gene family

MIPF0000045; MIR164

Literature search

30 open access papers mention tae-MIR164
(181 sentences)

Stem-loop

             c             c  uuucca  u    auuc      uc       ccggcugccgcggccuugccu 
5' gguggagaag agggcacgugcau ca      gc cggc    ccggcg  cggccgg                     g
   |||||||||| ||||||||||||| ||      || ||||    ||||||  |||||||                      
3' ccaccucuuc uuccguguacgua gu      cg gccg    ggccgc  gccggcc                     g
             u             c  ---ucc  -    --gc      gu       uagcucgcugcgugauggguc 

Deep sequencing

4504 reads, 0 reads per million, 116 experiments

Confidence

Annotation confidence: not enough data

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Comments

The mature sequence cloned in [1] has a U residue at position 14, which is incompatible with the EST assembly and the hairpin shown here.

Database links

• miRBase Tracker:MI0006173

Mature sequence tae-miR164

• Accession: MIMAT0005346
• Sequence: 3 - uggagaagcagggcacgugca - 23
• Deep sequencing: 3780 reads, 116 experiments
• Evidence: experimental; cloned [1]

References

1. PMID:17543110 "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)" Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q Genome Biol. 8:R96(2007).