miRBase entry: tae-MIR164

Stem-loop tae-MIR164


Accession
MI0006173
Description
Triticum aestivum tae-MIR164 precursor miRNA
Gene family
MIPF0000045; MIR164

Literature search
30 open access papers mention tae-MIR164
(182 sentences)

Sequence

3797 reads, 32 reads per million, 116 experiments
ggUGGAGAAGCAGGGCACGUGCAuccauuuccagcucggcauucccggcguccggccggccggcugccgcggccuugccuggcuggguagugcgucgcucgauccggccgugcgccggcggccggcccuugcaugcaugugccuuucuucuccacc
((((((((((.(((((((((((((.((......((.((((....(((((((.(((((((.((((((((.(((((......)))))))))))........))..))))))).)))))))..))))))...)).))))))))))))).))))))))))

Structure
          C             c  uuucca  u    auuc       c       -c  --------      g     uu 
ggUGGAGAAG AGGGCACGUGCAu ca      gc cggc    ccggcgu cggccgg  cg        gcugcc cggcc  g
|||||||||| ||||||||||||| ||      || ||||    ||||||| |||||||  ||        |||||| |||||   
ccaccucuuc uuccguguacgua gu      cg gccg    ggccgcg gccggcc  gc        ugaugg gucgg  c
          u             c  ---ucc  -    --gc       u       ua  ucgcugcg      -     uc 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
The mature sequence cloned in [1] has a U residue at position 14, which is incompatible with the EST assembly and the hairpin shown here.

Genome context
Unknown

Database links

Mature tae-miR164

Accession MIMAT0005346
Description Triticum aestivum tae-miR164 mature miRNA
Sequence 3 - UGGAGAAGCAGGGCACGUGCA - 23
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17543110
    Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
    Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q
    Genome Biol (2007) 8:R96