Stem-loop tae-MIR408

Accession

MI0006177

Description

Triticum aestivum tae-MIR408 precursor miRNA

Gene family

MIPF0000102; MIR408

Literature search

14 open access papers mention tae-MIR408
(57 sentences)

Sequence

12952 reads, 90 reads per million, 116 experiments

auuuugugaguggagaggggggaggagacagggauggagcagagcaagggaugaggcaagcaacaaaauuuaccaccugauuaugagaagagggagagaguugccagagcuucuguugcuguuguugcucccuccCUGCACUGCCUCUUCCCUGGCuccccucccaaaucucucccucccccucucu
...........(((((((((((.(((((..((((.((....((((.(((((.((((((.((..((.((((........)))).)).....((((((.((((.((.(.(((.......))).).)).)))).))))))))..)))))).))))).)))))).)))).....))))).)))))))))))

Structure

auuuugugagu           a     ---ca    u  agca    a     u      -a  aacaaaauuuaccaccugauuaugagaag      a    u  c g   uu 
           ggagagggggg ggaga     ggga gg    gagc aggga gaggca  gc                             agggag gagu gc a agc  c
           ||||||||||| |||||     |||| ||    |||| ||||| ||||||  ||                             |||||| |||| || | |||  u
           ucucucccccu ccucu     cccu cc    cuCG UCCCU CUCCGU  CG                             UCccuc cucg ug u ucg  g
-----------           c     cuaaa    c  ----    G     U      CA  -----------------------------      c    u  u g   uu 

Annotation confidence Not enough data

Genome context

Unknown

Mature tae-miR408

• Accession: MIMAT0005350
• Description: Triticum aestivum tae-miR408 mature miRNA
• Sequence: 136 - CUGCACUGCCUCUUCCCUGGC - 156
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17543110
   Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
   Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q
   Genome Biol (2007) 8:R96