Stem-loop sequence tae-MIR408

Accession

MI0006177 (change log)

Description

Triticum aestivum miR408 stem-loop

Gene family

MIPF0000102; MIR408

Literature search

14 open access papers mention tae-MIR408
(57 sentences)

Stem-loop

   auuuugugagu          ga     ---ca    u  agca    a     u      -a  aacaaaauuuaccaccugauuaugagaagagggagag 
5'            ggagaggggg  ggaga     ggga gg    gagc aggga gaggca  gc                                     a
              ||||||||||  |||||     |||| ||    |||| ||||| ||||||  ||                                      
3'            ucucuccccc  ccucu     cccu cc    cucg ucccu cuccgu  cg                                     g
   -----------          uc     cuaaa    c  ----    g     u      ca  ucccucccucguuguugucguugucuucgagaccguu 

Deep sequencing

15548 reads, 42.2 reads per million, 116 experiments

Confidence

Annotation confidence: not enough data

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Database links

• miRBase Tracker:MI0006177

Mature sequence tae-miR408

• Accession: MIMAT0005350
• Sequence: 136 - cugcacugccucuucccuggc - 156
• Deep sequencing: 14868 reads, 116 experiments
• Evidence: experimental; cloned [1]

References

1. PMID:17543110 "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)" Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q Genome Biol. 8:R96(2007).