Stem-loop sequence tae-MIR1120a

Accession

MI0006182 (change log)

Previous IDs

tae-MIR1120

Description

Triticum aestivum miR1120 stem-loop

Gene family

MIPF0000443; MIR1120

Literature search

12 open access papers mention tae-MIR1120a
(44 sentences)

Stem-loop

   -----g   cc  cc   c                c             ca         gu 
5'       cgg  gc  ggg agguacucccuccguc cauaauauaagaa  uuuuugaca  g
         |||  ||  ||| |||||||||||||||| |||||||||||||  |||||||||   
3'       guc  cg  ccc uuuaugagggaggcag guauuauauucuu  aaaaacugu  u
   cacuaa   cu  -a   -                a             ac         ga 

Deep sequencing

104563 reads, 105 reads per million, 116 experiments

Confidence

Annotation confidence: low

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Comments

Yao et al. misname this sequence miR504 in [1]. miR1120 is unrelated to mammalian miR-504;

Database links

• miRBase Tracker:MI0006182

Mature sequence tae-miR1120a

• Accession: MIMAT0005355
• Previous IDs: tae-miR1120
• Sequence: 70 - acauucuuauauuaugagacggag - 93
• Deep sequencing: 39053 reads, 116 experiments
• Evidence: experimental; cloned [1], RTPCR [1]

References

1. PMID:17543110 "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)" Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q Genome Biol. 8:R96(2007).